rs16949454 chr17:50898234 A>G
- Sequence
gtggaggtggaagaagagtaactt[A/G]cttgaagaacagtgagaatttctg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| MCF7 (Invasive ductal breast carcinoma) | 0.48 | 0.03 | 1.52 |
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Motif analysis
No data available
Genetic associations
GRASP fasting blood glucose, hdl cholesterol, mitral annular calcium, obesity with early age of onset (age >2), parkinsons disease
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Stomach, Thyroid, Uterus, Whole_Blood