rs16985457 chr19:54190483 G>C
- Sequence
gcccgagcggagagtggacggcgg[G/C]tgtccagggggcggggctttcggc
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney)
- ASB for transcription factors
- MEIS2_HUMAN HDAC1_HUMAN NRF1_HUMAN REQU_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEIS2_HUMAN | -2.21 | 2.29 | 2.00 | n/a | No Hit | |||
| HDAC1_HUMAN | -0.28 | 2.05 | 2.00 | n/a | n/a | |||
| NRF1_HUMAN | -0.42 | 0.93 | 1.89 | 0.86 | Weak Concordant | |||
| REQU_HUMAN | -0.23 | 2.18 | 2.00 | n/a | n/a | |||
| E2F1_HUMAN | -1.06 | 1.64 | 2.00 | -3.29 | Discordant |
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Motif analysis
