rs170287 chr20:33076962 T>G
- Sequence
tggcaccaccttcatgtgtgcacc[T/G]ccctctacagtttatagtgtgcat
- ASB in cell types
- epithelial cell of prostate MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CTCF_HUMAN FOS_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -2.87 | 2.37 | 1.33 | 2.57 | Concordant | |||
| FOS_HUMAN | -2.71 | 2.13 | 1.50 | n/a | n/a |
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Motif analysis
