rs17062801 chr4:176341230 G>A
- Sequence
tagtattgccatctaatgtacaca[G/A]tttacaacaccaaaatgcagaaag
- ASB in cell types
- foreskin keratinocyte A549 (lung carcinoma) K562 (myelogenous leukemia) LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.97 | 0.31 | 1.36 | n/a | No Hit | |||
| RAD21_HUMAN | 0.78 | 0.34 | 1.22 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Muscle_Skeletal