rs17076335 chr5:173719999 G>A
- Sequence
tacccggggttgcagcttccctcc[G/A]tgagatgcgctgctgaaatcaagg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) cranial neural crest cells liver
- ASB for transcription factors
- ESR1_HUMAN RXRA_HUMAN COT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.15 | -0.34 | 3.26 | n/a | No Hit | |||
| RXRA_HUMAN | -2.03 | 1.85 | 1.33 | n/a | No Hit | |||
| COT1_HUMAN | 1.84 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, advanced age-related macular degeneration (geographic atrophy), hdl cholesterol