rs1713434 chr14:20413368 T>C
- Sequence
caagttctgcctgcgctcggaccc[T/C]accttagactggggctggaaaccc
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) HEK293T (embryonic kidney)
- ASB for transcription factors
- CTCF_HUMAN GLIS1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.34 | 0.54 | 1.18 | n/a | No Hit | |||
| GLIS1_HUMAN | -2.97 | 2.20 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP chronic kidney disease, microalbuminuria, parkinsons disease, schizophrenia, tetrology of fallot, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Whole_Blood