ADASTRA v1.6.10
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rs17146982
chr7:22488949
A
>
G
Sequence
tcaaattgttgaagaagccataaa[A/G]atgactaggagttgcaaagaccgg
ASB in cell types
K562 (myelogenous leukemia)
A549 (lung carcinoma)
PC9 (lung adenocarcinoma)
ASB for transcription factors
RAD21_HUMAN
SMC3_HUMAN
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Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RAD21_HUMAN
-0.18
0.98
0.99
5.2·10
-4
1.81
n/a
n/a
SMC3_HUMAN
-0.62
0.88
1.00
6.8·10
-4
1.94
n/a
n/a
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5
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Motif analysis
No data available
Genetic associations
GRASP
diastolic blood pressure (dbp)
,
fasting blood glucose
,
neuroblastoma (brain cancer)
,
paternal transmission distortion
,
years of education
GTEx eQTL
Cells_Cultured_fibroblasts
,
Esophagus_Mucosa
,
Nerve_Tibial
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)