rs17165189 chr7:93232313 C>T
- Sequence
ctaccgccggcgtccagaagacta[C/T]agttcccagcaggcccagggaaag
- ASB in cell types
- SK-N-SH (neuroblastoma) HUES64 (embryonic stem cells) CD14+ monocytes K562 (myelogenous leukemia)
- ASB for transcription factors
- THA11_HUMAN STAT1_HUMAN CTCF_HUMAN USF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| THA11_HUMAN | 1.26 | -0.34 | 1.33 | -7.98 | Concordant | |||
| STAT1_HUMAN | 1.78 | n/a | 2.50 | -0.93 | Weak Concordant | |||
| CTCF_HUMAN | 0.32 | 0.76 | 1.29 | n/a | No Hit | |||
| USF1_HUMAN | 1.33 | 0.20 | 1.64 | n/a | No Hit | |||
| GABPA_HUMAN | 1.01 | 0.03 | 1.50 | n/a | No Hit |
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Motif analysis
