rs17173 chr7:104884019 T>C
- Sequence
atggaatcacacagacaaggcttc[T/C]gggtctagccctgcctcgtaaaac
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) VCaP (prostate carcinoma) LNCaP C4-2 (prostate carcinoma)
- ASB for transcription factors
- ELF1_HUMAN E4F1_HUMAN ANDR_HUMAN ELF4_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF1_HUMAN | -2.76 | 2.42 | 1.33 | 5.90 | Concordant | |||
| E4F1_HUMAN | -2.11 | 1.92 | 1.33 | n/a | n/a | |||
| ANDR_HUMAN | -0.37 | 1.32 | 1.46 | n/a | No Hit | |||
| ELF4_HUMAN | -1.76 | 2.04 | 1.33 | n/a | n/a | |||
| ETV1_HUMAN | -2.35 | 1.92 | 1.50 | 5.28 | Concordant |
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Motif analysis
