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rs17174 chr20:1804334 G>T

Sequence
tgtggagaaacaggttgcacgata[G/T]gtggagaaacaacaggttgcacga
ASB in cell types
keratinocytes
ASB for transcription factors
SNAI2_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SNAI2_HUMAN -1.72 1.65 1.000.03 1.33 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP total cholesterol
GTEx eQTL Brain_Amygdala Brain_Anterior_cingulate_cortex_BA24 Brain_Caudate_basal_ganglia Brain_Cortex Brain_Frontal_Cortex_BA9 Brain_Hippocampus Brain_Hypothalamus Brain_Nucleus_accumbens_basal_ganglia Brain_Putamen_basal_ganglia Lung Testis

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