rs17196808 chr20:50292743 C>T
- Sequence
tattaatgacccggagccacatga[C/T]ggagcatgacacagcacttttggg
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) CD14+ monocytes breast tumor tissue
- ASB for transcription factors
- STAT1_HUMAN ZN316_HUMAN CREM_HUMAN ZN639_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.13 | n/a | 2.50 | n/a | No Hit | |||
| ZN316_HUMAN | 0.65 | -0.77 | 2.00 | n/a | n/a | |||
| CREM_HUMAN | 2.42 | -3.68 | 2.00 | n/a | No Hit | |||
| ZN639_HUMAN | 0.73 | -0.68 | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | 1.79 | -0.99 | 4.29 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood