rs1724429 chr17:45584654 A>G
- Sequence
gtcctcctacaccactttgttgac[A/G]gccctccagaccgcagccgtccgg
- ASB in cell types
- LNCaP C4-2B (prostate carcinoma) Th1-cells LNCaP (prostate carcinoma) neural cell
- ASB for transcription factors
- ZFX_HUMAN CTCF_HUMAN TBX21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | 1.87 | -1.80 | 1.33 | n/a | No Hit | |||
| CTCF_HUMAN | 1.07 | -0.24 | 2.48 | 0.23 | Weak Discordant | |||
| TBX21_HUMAN | 1.97 | -1.53 | 1.33 | -5.74 | Concordant |
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Motif analysis
