rs17251434 chr10:3890339 A>G
- Sequence
agtgaattttgacatcaataagac[A/G]attactcaacttctaaaccctcct
- ASB in cell types
- HepG2 (hepatoblastoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- NFIL3_HUMAN CEBPG_HUMAN SOX13_HUMAN ERF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFIL3_HUMAN | -2.27 | 2.08 | 1.33 | n/a | n/a | |||
| CEBPG_HUMAN | -0.21 | 1.82 | 1.67 | n/a | No Hit | |||
| SOX13_HUMAN | -1.41 | 1.76 | 1.33 | n/a | n/a | |||
| ERF_HUMAN | -1.67 | 1.72 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, body mass index (bmi), college completion, hdl cholesterol, hiv-1 disease progression, total cholesterol