rs172705 chr3:4303349 G>A
- Sequence
gcggcccaggactgtcagggtagt[G/A]ggcgttgcgtgaggcgggtaaatg
- ASB in cell types
- breast tumor tissue CD14+ monocytes HeLa S3 (cervical adenocarcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- ESR1_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.69 | -0.33 | 1.94 | n/a | No Hit | |||
| STAT1_HUMAN | 1.21 | n/a | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Thyroid