rs17287575 chr3:42190958 G>C
- Sequence
cggggcttcttctttgggccttca[G/C]atctctatcatcccacccttttca
- ASB in cell types
- VCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.17 | 1.04 | 1.06 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP birth weight, college completion, irritible bowel syndrome, lp-pla2 activity, years of education