rs17291738 chr17:1829916 C>T
- Sequence
ggaccatgggtgggtcacgtgggc[C/T]gcgcctcggccaatgcggcggctg
- ASB in cell types
- GM12878 (female B-cells) Ishikawa (endometrial adenocarcinoma) SK-N-SH (neuroblastoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- USF1_HUMAN RAD51_HUMAN IKZF1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| USF1_HUMAN | 0.27 | 1.33 | 1.38 | n/a | No Hit | |||
| RAD51_HUMAN | -1.69 | 1.83 | 1.33 | n/a | n/a | |||
| IKZF1_HUMAN | -1.42 | 1.21 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Amygdala, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach