rs17306848 chr3:42476963 C>G
- Sequence
ctaaagccaagactgcattagtag[C/G]tggaccggctctcctggtggcctc
- ASB in cell types
- LNCaP (prostate carcinoma) VCaP (prostate carcinoma) ZR-75-1 (invasive ductal carcinoma)
- ASB for transcription factors
- ANDR_HUMAN ESR1_HUMAN GRHL2_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 0.95 | -0.26 | 1.52 | n/a | No Hit | |||
| ESR1_HUMAN | 1.59 | -0.52 | 2.10 | n/a | No Hit | |||
| GRHL2_HUMAN | 1.39 | -0.25 | 1.42 | -1.81 | Weak Concordant | |||
| CTCF_HUMAN | 1.29 | 0.38 | 1.00 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
