rs173966 chr5:115574726 A>G
- Sequence
cgcctaggctggagtgcagtggcc[A/G]gatctaggctcactgcgacccctg
- ASB in cell types
- neural cell A549 (lung carcinoma) H1 (embryonic stem cells) lymphoblastoid cells
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.20 | 0.64 | 1.74 | n/a | n/a | |||
| SMC3_HUMAN | 0.68 | 0.57 | 1.92 | n/a | n/a | |||
| CTCF_HUMAN | 0.88 | 0.63 | 1.44 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood