rs17423390 chr1:21687978 G>T
- Sequence
tgtgcatggatggggtagatatgg[G/T]tctgcctcatcattccagggccta
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- MTG16_HUMAN ARI1B_HUMAN NFE2_HUMAN TAL1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MTG16_HUMAN | n/a | 0.66 | 1.50 | n/a | n/a | |||
| ARI1B_HUMAN | n/a | 0.60 | 1.33 | n/a | n/a | |||
| NFE2_HUMAN | -2.87 | 2.67 | 1.42 | 2.33 | Concordant | |||
| TAL1_HUMAN | -0.05 | 1.27 | 1.47 | n/a | No Hit | |||
| EMSY_HUMAN | -1.96 | 1.77 | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
EMBL-EBI high light scatter reticulocyte count, high light scatter reticulocyte percentage of red cells, immature fraction of reticulocytes
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Muscle_Skeletal, Nerve_Tibial, Spleen, Thyroid, Whole_Blood