ADASTRA v1.6.10
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adastra.autosome.org
rs17523471
chr3:185586230
T
>
C
Sequence
ggcgggaggaggtgacgtcaggag[T/C]ggtggcgggcgggggcctctggta
ASB in cell types
GM12878 (female B-cells)
tibial nerve
HEK293 (embryonic kidney)
VCaP (prostate carcinoma)
ASB for transcription factors
FOXK2_HUMAN
IKZF2_HUMAN
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXK2_HUMAN
2.39
-0.44
7.7·10
-7
1.00
1.22
n/a
n/a
IKZF2_HUMAN
1.94
n/a
8.1·10
-3
1.00
1.33
n/a
n/a
CTCF_HUMAN
0.59
1.59
0.94
0.01
1.29
n/a
No Hit
Items per page:
5
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Artery_Aorta
,
Artery_Tibial
,
Brain_Cerebellum
,
Lung
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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log2(Alt/Ref motif p-value)