rs1753294 chr6:37033435 T>G
- Sequence
tgaggtcatgggactttcacatct[T/G]tccacttccccagcatgacgctct
- ASB in cell types
- K562 (myelogenous leukemia) Th1-cells periferal blood macrophages CD14+ monocytes
- ASB for transcription factors
- TBX21_HUMAN MEIS2_HUMAN ATF3_HUMAN SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX21_HUMAN | -2.04 | 2.13 | 1.33 | -1.84 | Weak Discordant | |||
| MEIS2_HUMAN | 3.33 | n/a | 3.00 | 3.92 | Discordant | |||
| ATF3_HUMAN | 2.56 | -3.99 | 3.00 | n/a | No Hit | |||
| SPI1_HUMAN | 1.79 | 0.57 | 2.17 | -1.06 | Weak Concordant | |||
| STAT1_HUMAN | 0.93 | n/a | 2.50 | n/a | No Hit |
Items per page:
1 – 5 of 10
Motif analysis
