rs17565804 chr12:57782637 C>T
- Sequence
gggtaattcccgtatgaaatgtgt[C/T]gtctcaagaaatcaagtagaggcg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) cranial neural crest cells breast tumor tissue
- ASB for transcription factors
- FOXA1_HUMAN AP2A_HUMAN ESR1_HUMAN SIN3A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.03 | 1.00 | 1.52 | n/a | No Hit | |||
| AP2A_HUMAN | 2.06 | -1.74 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.06 | -3.98 | 2.50 | n/a | No Hit | |||
| SIN3A_HUMAN | -2.23 | 2.00 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Uterus, Whole_Blood