rs17610659 chr1:109960674 T>C
- Sequence
agcaaaatgggaggagaagggcat[T/C]ctggggagagagaagagtttgaac
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ZIC2_HUMAN GLIS1_HUMAN NANOG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZIC2_HUMAN | n/a | 2.92 | 2.00 | n/a | n/a | |||
| GLIS1_HUMAN | -1.87 | 2.22 | 2.00 | n/a | n/a | |||
| NANOG_HUMAN | n/a | 1.68 | 1.50 | n/a | No Hit |
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