rs176107 chr5:90096845 A>G
- Sequence
gagtgtgagtgtcagatttgagga[A/G]tcttagatacaggagttgtgttat
- ASB in cell types
- K562 (myelogenous leukemia) HAEC (human aortic endothelial cells)
- ASB for transcription factors
- ATF3_HUMAN KDM1A_HUMAN ARI1B_HUMAN HDAC1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF3_HUMAN | 3.02 | n/a | 2.00 | n/a | No Hit | |||
| KDM1A_HUMAN | 2.95 | n/a | 2.00 | n/a | n/a | |||
| ARI1B_HUMAN | 2.62 | n/a | 2.00 | n/a | n/a | |||
| HDAC1_HUMAN | 1.93 | -1.48 | 2.00 | n/a | n/a | |||
| PKNX1_HUMAN | 2.00 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, decrease in fev1/fvc ratio (in nonasthmatic participants), late onset alzheimers disease, ldl cholesterol, lung function, ratio of forced expiratory volume in 1 second (fev1) to forced vital capacity (fvc) (fev1/fvc) ratio percent predicted (in nonasthmatic participants), schizophrenia