rs17624997 chr8:32280133 G>A
- Sequence
taataaatgaatgaacaaacaaga[G/A]catttgtctgtacaagttacagag
- ASB in cell types
- A549 (lung carcinoma)
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.44 | -1.16 | 2.00 | n/a | n/a | |||
| SMC3_HUMAN | 1.29 | -0.93 | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.97 | -0.78 | 1.86 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, fasting blood glucose, neuroticism, urinary albumin-to-creatinine ratio