rs1762929 chr1:16613699 G>A
- Sequence
aggttaggggccgcgcaggcggag[G/A]aaaggagtaacccaggggaaggac
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- CTCF_HUMAN ZFX_HUMAN MAX_HUMAN ZBT7A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.17 | 1.71 | 1.85 | n/a | No Hit | |||
| ZFX_HUMAN | 0.88 | 2.11 | 1.77 | n/a | No Hit | |||
| MAX_HUMAN | 0.40 | 1.92 | 1.60 | n/a | No Hit | |||
| ZBT7A_HUMAN | -1.57 | 1.96 | 1.50 | n/a | No Hit | |||
| ZFP91_HUMAN | n/a | 0.41 | 3.00 | n/a | n/a |
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Motif analysis
