rs17653344 chr5:172420670 T>C
- Sequence
tcagtctccacccttattgacttc[T/C]tgggtggagcagggaccccggcaa
- ASB in cell types
- HepG2 (hepatoblastoma) K562 (myelogenous leukemia) GM12878 (female B-cells)
- ASB for transcription factors
- PKNX1_HUMAN FOXA2_HUMAN PBX2_HUMAN CEBPB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | -0.89 | 0.91 | 1.50 | n/a | No Hit | |||
| FOXA2_HUMAN | 0.33 | 2.09 | 1.33 | n/a | No Hit | |||
| PBX2_HUMAN | n/a | 1.20 | 2.00 | n/a | No Hit | |||
| CEBPB_HUMAN | 1.01 | 3.14 | 2.25 | n/a | No Hit | |||
| NFYC_HUMAN | -2.03 | 1.81 | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Whole_Blood