rs17663005 chr8:125452146 T>C
- Sequence
gatttgtactcctcttgcgtaagc[T/C]gcagattaggaaagcattaggtaa
- ASB in cell types
- breast tumor tissue SK-BR-3 (breast adenocarcinoma)
- ASB for transcription factors
- ESR1_HUMAN PRGR_HUMAN AP2C_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.43 | 0.24 | 2.25 | n/a | No Hit | |||
| PRGR_HUMAN | 2.31 | n/a | 2.50 | n/a | No Hit | |||
| AP2C_HUMAN | 2.14 | -3.03 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, ldl cholesterol, total cholesterol, triglycerides, waist hip ratio