rs1771646 chr10:31031752 G>C
- Sequence
ctccccaaggaactgacgccccca[G/C]agccaccaccaccgccgggactgc
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) HepG2 (hepatoblastoma) cranial neural crest cells
- ASB for transcription factors
- FOXK2_HUMAN EGR1_HUMAN MNT_HUMAN CREB1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 0.17 | 2.47 | 1.56 | n/a | n/a | |||
| EGR1_HUMAN | -1.41 | 1.98 | 1.78 | 4.87 | Concordant | |||
| MNT_HUMAN | -0.84 | 1.41 | 1.83 | n/a | n/a | |||
| CREB1_HUMAN | 0.34 | 0.98 | 1.29 | n/a | No Hit | |||
| HDAC1_HUMAN | -0.47 | 1.72 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Nerve_Tibial, Pituitary, Testis, Thyroid, Whole_Blood