rs1776178 chr1:241848232 A>G
- Sequence
tttcgcgcgctgtgtaggcaagtt[A/G]cccgtgttctgcgttgccggccgt
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) HEK293T (embryonic kidney) GM12878 (female B-cells)
- ASB for transcription factors
- HIC1_HUMAN E2F4_HUMAN E2F1_HUMAN GABPA_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HIC1_HUMAN | n/a | 3.24 | 4.00 | 3.64 | Concordant | |||
| E2F4_HUMAN | 1.69 | -1.46 | 1.50 | n/a | No Hit | |||
| E2F1_HUMAN | 0.05 | 0.98 | 1.76 | n/a | No Hit | |||
| GABPA_HUMAN | 0.67 | 0.55 | 1.73 | n/a | No Hit |
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Motif analysis
