rs177990 chr18:22481424 C>T
- Sequence
tccagaatatacaagaaatgcaaa[C/T]aactcaacagaaaataaacaaata
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.73 | 0.41 | 1.49 | -1.44 | Weak Concordant |
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Motif analysis
