rs178033 chr22:20778282 C>T
- Sequence
tggggggctgaggtgggtggatca[C/T]ctgaggtcaggagtttgagaccag
- ASB in cell types
- K562 (myelogenous leukemia) LNCaP C4-2B (prostate carcinoma) HEK293 (embryonic kidney)
- ASB for transcription factors
- MNT_HUMAN ATF3_HUMAN ARNT_HUMAN REQU_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | n/a | 1.83 | 5.00 | n/a | n/a | |||
| ATF3_HUMAN | n/a | 3.51 | 5.00 | -2.24 | Discordant | |||
| ARNT_HUMAN | n/a | 1.65 | 4.33 | n/a | No Hit | |||
| REQU_HUMAN | n/a | 2.82 | 4.50 | n/a | n/a | |||
| FOXA1_HUMAN | n/a | 1.76 | 3.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood