rs17819278 chr17:55496652 G>A
- Sequence
tcttgctcctcttgggcaatactt[G/A]tctgtgtctgccctctagttctca
- ASB in cell types
- A549 (lung carcinoma) foreskin keratinocyte GM12878 (female B-cells) HepG2 (hepatoblastoma)
- ASB for transcription factors
- JUN_HUMAN CTCF_HUMAN RAD21_HUMAN GCR_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.85 | -1.03 | 2.89 | n/a | No Hit | |||
| CTCF_HUMAN | 1.52 | -0.50 | 1.85 | n/a | No Hit | |||
| RAD21_HUMAN | 1.52 | -0.96 | 2.86 | n/a | n/a | |||
| GCR_HUMAN | 1.89 | -0.10 | 2.36 | n/a | No Hit | |||
| BCL3_HUMAN | 1.79 | -0.88 | 3.00 | n/a | n/a |
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