rs178513 chr11:44066165 T>G
- Sequence
aacaggcctggaagcccaacccgg[T/G]gcggaccgccctcagtctcctagt
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) A549 (lung carcinoma) HEK293T (embryonic kidney)
- ASB for transcription factors
- CTCF_HUMAN IKZF1_HUMAN FOXK2_HUMAN CTCFL_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.99 | 0.42 | 1.58 | n/a | No Hit | |||
| IKZF1_HUMAN | 1.04 | -0.19 | 1.67 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.30 | -0.34 | 1.83 | n/a | n/a | |||
| CTCFL_HUMAN | 1.71 | -1.13 | 1.75 | 3.89 | Discordant | |||
| SMCA4_HUMAN | 1.69 | -0.67 | 1.78 | n/a | n/a |
Items per page:
1 – 5 of 10
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Colon_Sigmoid, Esophagus_Muscularis, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid