rs178602 chr16:57447393 T>C
- Sequence
tctccagccgtcgactccacgcct[T/C]gcgcctctcgcgagaggaggaggc
- ASB in cell types
- keratinocytes MCF7 (Invasive ductal breast carcinoma) fetal bone marrow-derived mononuclear cells lymphoblastoid cells
- ASB for transcription factors
- SNAI2_HUMAN CREB1_HUMAN FOXA1_HUMAN ZFX_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | n/a | 3.32 | 1.50 | n/a | No Hit | |||
| CREB1_HUMAN | -2.87 | 1.94 | 3.50 | n/a | No Hit | |||
| FOXA1_HUMAN | -1.56 | 1.72 | 1.50 | n/a | No Hit | |||
| ZFX_HUMAN | -0.11 | 0.89 | 1.33 | n/a | No Hit | |||
| KMT2A_HUMAN | 0.09 | 2.02 | 1.56 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood