rs17882279 chr5:80083688 T>G
- Sequence
ccttcaacgtaattcttaagctta[T/G]ttatatatttggctccccctagtg
- ASB in cell types
- A549 (lung carcinoma) foreskin keratinocyte GM12878 (female B-cells)
- ASB for transcription factors
- RAD21_HUMAN CTCF_HUMAN FOXA1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.21 | 0.10 | 1.74 | n/a | n/a | |||
| CTCF_HUMAN | 1.02 | 0.16 | 1.70 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.84 | 0.02 | 1.77 | -4.85 | Concordant |
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Motif analysis
