rs179971 chr6:16362511 C>T
- Sequence
ttatcaccatcatcacttcgctcc[C/T]gcccggtccctctcctgtcatcac
- ASB in cell types
- MDA-MB-231 (breast adenocarcinoma)
- ASB for transcription factors
- GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | -1.45 | 2.15 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, infant head circumference, major depressive disorder (broad definition), major depressive disorder (broad definition) (males), obesity with early age of onset (age >2), systolic blood pressure (sbp)