rs1800759 chr4:99144358 T>G
- Sequence
atgttgcttaattctccaatcact[T/G]ccttttctcctttgttgctgtaat
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- ELF3_HUMAN NC2A_HUMAN CEBPA_HUMAN ETV5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF3_HUMAN | 2.06 | -1.79 | 1.33 | -6.04 | Concordant | |||
| NC2A_HUMAN | 2.16 | -1.96 | 1.33 | n/a | n/a | |||
| CEBPA_HUMAN | 1.04 | -1.16 | 1.42 | n/a | No Hit | |||
| ETV5_HUMAN | 1.84 | -1.73 | 1.33 | -4.34 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Whole_Blood