rs1801058 chr4:3037423 T>C
- Sequence
tcctggatatcgagcagttctcgg[T/C]ggtgaaagggatctacctggacac
- ASB in cell types
- GM12878 (female B-cells) lymphoblastoid cells
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| GM12878 (female B-cells) | 0.70 | 0.33 | 1.35 | |||
| lymphoblastoid cells | 1.28 | -1.08 | 1.33 |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, alcohol dependence, alcohol dependence (early age of onset), college completion, comorbid depressive syndrome and alcohol dependence, height, ldl cholesterol, serum creatinine, total cholesterol, triglycerides, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Nerve_Tibial, Ovary, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood