rs1805433 chr17:5486568 C>T
- Sequence
gctttcgctcgccgaggcgcgtat[C/T]agtcggaattttggggagccaacc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) breast tumor tissue
- ASB for transcription factors
- PKNX1_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | 1.26 | -1.26 | 1.00 | n/a | No Hit | |||
| ESR1_HUMAN | 1.71 | n/a | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Heart_Atrial_Appendage, Testis