rs1814822 chr3:117036737 T>C
- Sequence
aacttggattcctgacttccctca[T/C]ccttgccctacacacttaattaaa
- ASB in cell types
- GM12878 (female B-cells) cranial neural crest cells periferal blood macrophages CD14+ monocytes
- ASB for transcription factors
- COT1_HUMAN IKZF2_HUMAN IKZF1_HUMAN MTA2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | -3.45 | 2.79 | 1.67 | 5.08 | Concordant | |||
| IKZF2_HUMAN | -1.56 | 1.19 | 1.33 | n/a | n/a | |||
| IKZF1_HUMAN | -1.44 | 1.06 | 1.33 | n/a | No Hit | |||
| MTA2_HUMAN | -1.84 | 1.64 | 1.33 | n/a | n/a | |||
| SPI1_HUMAN | 0.20 | 1.76 | 2.25 | -1.21 | Weak Discordant |
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Motif analysis
Genetic associations
GRASP 2 hour glucose, body mass index (bmi), ldl cholesterol change with statins, serum creatinine, total cholesterol change with statins, triglycerides change with statins