rs181778593 chr11:62841551 T>G
- Sequence
aatccaactcaaacaacaagaaca[T/G]aactatttagcttgtaccctaact
- ASB in cell types
- HCT-116 (colon carcinoma) HT29 (colon adenocarcinoma) HepG2 (hepatoblastoma) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- SIN3A_HUMAN CREB1_HUMAN GCR_HUMAN SP1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SIN3A_HUMAN | 2.58 | -2.82 | 1.33 | n/a | n/a | |||
| CREB1_HUMAN | 1.58 | -0.84 | 1.42 | n/a | No Hit | |||
| GCR_HUMAN | 2.23 | -2.39 | 1.50 | n/a | No Hit | |||
| SP1_HUMAN | 1.75 | -0.89 | 1.22 | n/a | No Hit | |||
| KMT2A_HUMAN | 2.12 | n/a | 1.25 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood