rs1820513 chr4:158920704 A>G
- Sequence
gtttatcaagacaatacatgcacc[A/G]ctgaacagagacccttatcagtag
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- COT1_HUMAN MITF_HUMAN TIF1A_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | 2.25 | n/a | 2.00 | n/a | No Hit | |||
| MITF_HUMAN | 2.19 | n/a | 2.00 | n/a | No Hit | |||
| TIF1A_HUMAN | 1.85 | -1.25 | 2.00 | n/a | n/a | |||
| KDM1A_HUMAN | 1.67 | -1.17 | 2.00 | n/a | n/a | |||
| HDAC1_HUMAN | 1.64 | -0.73 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Putamen_basal_ganglia, Muscle_Skeletal, Nerve_Tibial, Testis, Whole_Blood