rs182366 chr1:235504679 G>C
- Sequence
cactcggcggccgcgggggcgaag[G/C]gcgaggccccacacagagcatgcg
- ASB in cell types
- A549 (lung carcinoma) foreskin keratinocyte HepG2 (hepatoblastoma) MM1.S (plasma cell myeloma)
- ASB for transcription factors
- CREB1_HUMAN CTCF_HUMAN RAD21_HUMAN HNF4A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 1.32 | 0.53 | 1.44 | n/a | No Hit | |||
| CTCF_HUMAN | 0.69 | 0.86 | 1.48 | 1.00 | Weak Discordant | |||
| RAD21_HUMAN | -0.06 | 0.90 | 1.75 | n/a | n/a | |||
| HNF4A_HUMAN | 1.26 | -0.61 | 1.33 | n/a | No Hit | |||
| CLOCK_HUMAN | 1.96 | -1.81 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cortex, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood