rs183225 chr6:27792487 T>C
- Sequence
acaccgacactctggaagtggtct[T/C]cgaggaccgcatgctccctcttgt
- ASB in cell types
- HepG2 (hepatoblastoma) A549 (lung carcinoma) epidermal keratinocytes
- ASB for transcription factors
- RAD21_HUMAN FOXA3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.80 | 0.28 | 1.38 | n/a | n/a | |||
| FOXA3_HUMAN | 1.84 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Thyroid