rs1847154 chr8:17922829 A>G
- Sequence
tttcggcttaaagagccagaagcg[A/G]caccacagactccggcgggtcaca
- ASB in cell types
- A549 (lung carcinoma) CD14+ monocytes foreskin keratinocyte HCT-116 (colon carcinoma)
- ASB for transcription factors
- STAT1_HUMAN JUN_HUMAN COT1_HUMAN USF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 0.08 | 2.19 | 2.00 | n/a | No Hit | |||
| JUN_HUMAN | 1.06 | -0.11 | 1.79 | n/a | No Hit | |||
| COT1_HUMAN | -2.08 | 2.00 | 1.33 | n/a | No Hit | |||
| USF1_HUMAN | 1.12 | -0.39 | 1.55 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood