rs1860816 chr5:13554130 G>C
- Sequence
cgaggcggtgcatcctgggtagca[G/C]agtcctcaatgctgcctggcacgc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) A549 (lung carcinoma)
- ASB for transcription factors
- RFX1_HUMAN PKNX1_HUMAN TEAD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFX1_HUMAN | n/a | 2.37 | 3.00 | -0.49 | Weak Discordant | |||
| PKNX1_HUMAN | n/a | 1.87 | 2.00 | n/a | No Hit | |||
| TEAD4_HUMAN | -3.06 | 2.29 | 2.00 | n/a | No Hit |
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Motif analysis
