rs1865116 chr19:45791252 G>A
- Sequence
ggacggggcaaccacagacgggaa[G/A]gggacccaaatcacagacaagagt
- ASB in cell types
- monocyte-derived dendritic cells periferal blood macrophages HL-60 (acute myeloid leukemia)
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| monocyte-derived dendritic cells | 2.20 | n/a | 2.00 | |||
| periferal blood macrophages | 1.62 | -2.35 | 2.50 | |||
| HL-60 (acute myeloid leukemia) | 1.00 | 0.06 | 1.40 |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, age at death with kuru exposure, fasting blood glucose, infant head circumference, irritible bowel syndrome, partial epilepsy, refractive error
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood