rs1865236 chr2:173402553 A>G
- Sequence
ttgtggaataaaatacgtccagac[A/G]gggttacgacgtgctttggattcc
- ASB in cell types
- A549 (lung carcinoma) HEK293 (embryonic kidney) K562 (myelogenous leukemia) GM12878 (female B-cells)
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.51 | 0.40 | 1.79 | n/a | n/a | |||
| SMC3_HUMAN | 1.43 | -0.03 | 1.91 | n/a | n/a | |||
| CTCF_HUMAN | 0.85 | 0.73 | 1.55 | 3.75 | Discordant |
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Motif analysis
