rs1877199 chr15:85169040 C>T
- Sequence
ctgggaagatgaaaataatgacat[C/T]gccccccagtggaggagtgtggga
- ASB in cell types
- HEK293 (embryonic kidney) A549 (lung carcinoma) 22RV1 (prostate carcinoma) foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.75 | 0.51 | 1.35 | -0.46 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP acute lung injury following major trauma, hdl cholesterol, microalbuminuria, obesity with early age of onset (age >2), refractive error, waist hip ratio
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid